dada2: sequence counts tool metadata

Miscellaneous

Name: dada2: sequence counts

Description:

Id: dada2_seqCounts

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.20+galaxy0

Version: 1.20+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.20+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.20+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.18+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.16+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.14+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.12+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.12+galaxy0

dada2_seqCounts

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

bioconductor-dada2

1.20

package

Functional tests

name

inputs

outputs

required files

Test-1

inrep_0|input: F3D0_S188_L001_R1_001.tab
inrep_0|name: filter

name: value

F3D0_S188_L001_R1_001.tab
value

Test-2

inrep_0|input: ['dada_F3D0_S188_L001_R1.Rdata', 'dada_F3D141_S207_L001_R1.Rdata']
inrep_0|name: dadaF

name: value

dada_F3D0_S188_L001_R1.Rdata
dada_F3D141_S207_L001_R1.Rdata
value

Test-3

inrep_0|input: ['mergePairs_F3D0_S188_L001.Rdata', 'mergePairs_F3D141_S207_L001.Rdata']
inrep_0|name: merge

name: value

mergePairs_F3D0_S188_L001.Rdata
mergePairs_F3D141_S207_L001.Rdata
value

Test-4

inrep_0|input: makeSequenceTable.tab
inrep_0|name: seqtab

name: value

makeSequenceTable.tab
value

Test-5

inrep_0|input: removeBimeraDenovo.tab
inrep_0|name: nochim

name: value

removeBimeraDenovo.tab
value