Galaxy |

dada2: sequence counts tool metadata

Miscellaneous

Name: dada2: sequence counts

Description:

Id: dada2_seqCounts

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.12+galaxy1

Version: 1.12+galaxy1

Version command string: echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.14+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.12+galaxy1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.12+galaxy0

dada2_seqCounts

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

bioconductor-dada2

1.12

package

Functional tests

name

inputs

outputs

required files

Test-1

inrep_0|name: filter
inrep_0|input: filterAndTrim_F3D0.tab

attributes: name

filterAndTrim_F3D0.tab
name

Test-2

inrep_0|name: dadaF
inrep_0|input: dada_F3D0_R1.Rdata

attributes: name

dada_F3D0_R1.Rdata
name

Test-3

inrep_0|name: merge
inrep_0|input: mergePairs_F3D0.Rdata

attributes: name

mergePairs_F3D0.Rdata
name

Test-4

inrep_0|name: seqtab
inrep_0|input: makeSequenceTable_F3D0.tab

attributes: name

makeSequenceTable_F3D0.tab
name

Test-5

inrep_0|name: nochim
inrep_0|input: removeBimeraDenovo_F3D0.tab

attributes: name

removeBimeraDenovo_F3D0.tab
name