| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_omssaadapter/OMSSAAdapter/2.8+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_omssaadapter/OMSSAAdapter/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_omssaadapter/OMSSAAdapter/2.5+galaxy0 |
| OMSSAAdapter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.8 | package |
| openms-thirdparty | 2.8 | package |
| omssa | 2.1.9 | package |
| blast | 2.13.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: spectra.mzML precursor_mass_tolerance: 5.0 precursor_error_units: ppm fragment_mass_tolerance: 0.3 database: proteins.fasta min_precursor_charge: 1 max_precursor_charge: 3 fixed_modifications: None variable_modifications: Oxidation (M) v: 1 enzyme: Trypsin hl: 30 he: 1.0 adv_opts|pc: 1 adv_opts|hs: 4 adv_opts|tez: 1 adv_opts|tom: 0 adv_opts|tem: 0 adv_opts|tex: 1446.94 adv_opts|zt: 3 adv_opts|z1: 0.95 adv_opts|zc: 1 adv_opts|zcc: 2 adv_opts|zoh: 2 adv_opts|no: 4 adv_opts|nox: 40 adv_opts|i: 1,4 adv_opts|sp: 100 adv_opts|sb1: 1 adv_opts|sct: 0 adv_opts|x: 0 adv_opts|hm: 2 adv_opts|ht: 6 adv_opts|mm: 128 adv_opts|mnm: False adv_opts|is: 0.0 adv_opts|ir: 0.0 adv_opts|ii: 0.0 adv_opts|chunk_size: 0 adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
spectra.mzML proteins.fasta value |