| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/biobox_add_taxid/biobox_add_taxid/1.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/biobox_add_taxid/biobox_add_taxid/0.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/biobox_add_taxid/biobox_add_taxid/0.4+galaxy0 |
| biobox_add_taxid |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| biobox_add_taxid | 1.2 | package |
| Additional information about this tool |
ln -s '$biobox_file' 'biobox.tsv' &&
#if $input.is_select == 'contig':
ln -s '$contig2taxid' 'contig.tsv' &&
#else:
ln -s '$binid2taxid' 'bin.tsv' &&
#end if
biobox_add_taxid.py
'biobox.tsv'
#if $input.is_select == 'contig':
-c 'contig.tsv'
#else:
-b 'bin.tsv'
#end if
-k_c ${key_col}
-t_c ${taxid_col}
&&
cp 'modified_biobox_file.tsv' '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
biobox_file: biobox_file.tsv input|binid2taxid: binid2taxid.tsv input|key_col: 1 input|taxid_col: 2 input|is_select: bin |
name: value |
biobox_file.tsv binid2taxid.tsv value |
| Test-2 |
biobox_file: biobox_file.tsv input|contig2taxid: kraken2.tsv input|key_col: 2 input|taxid_col: 3 input|is_select: contig |
name: value |
biobox_file.tsv kraken2.tsv value |