Revision: 0:b9424c715a0d

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_umap

Miscellaneous

Name: Seurat UMAP

Description: dimensionality reduction

Id: seurat_run_umap

Guid: toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_umap/seurat_run_umap/4.0.4+galaxy0

Version: 4.0.4+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", seurat version" $(R --vanilla --slave -e "library(seurat); cat(sessionInfo()\$otherPkgs\$seurat\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_umap/seurat_run_umap/4.0.4+galaxy0 (this tool)

seurat_run_umap

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
seurat-scripts	4.0.0	package

Functional tests

name	inputs	outputs	required files
Test-1	input|rds_seurat_file: E-MTAB-6077-3k_features_90_cells-clusters.rds dims: 1:10	name: value	E-MTAB-6077-3k_features_90_cells-clusters.rds value
Test-2	input|rds_seurat_file: E-MTAB-6077-3k_features_90_cells-clusters.rds dims: c(1,2,3,4,5,6,7,8,9,10)	name: value	E-MTAB-6077-3k_features_90_cells-clusters.rds value