Repository revision
35:6971ee03a002

Repository 'hyphy_sm19'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19

HyPhy-SM2019 tool metadata
Miscellaneous
HyPhy-SM2019
Partition Tree using Modified Slatkin-Maddison Test
hyphy_sm19
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.83+galaxy0
2.5.83+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.83+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.47+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.36+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.31+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.31+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.30+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.29+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.26+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.25+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.24+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.23+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.21+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.17+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.15+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.14+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.12+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.11+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.9+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.8+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.7+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.0+galaxy0
hyphy_sm19
Requirements (dependencies defined in the <requirements> tag set)
name version type
hyphy 2.5.83 package
Additional information about this tool
ln -s '$input_file' sm19_input.nhx &&
        hyphy CPU=\${GALAXY_SLOTS:-4}   sm --tree ./sm19_input.nhx
        --groups '$len($partitions)'
        #for $n, $partition in enumerate($partitions):
            --description-${n+1} '${partition.label}'
            --regexp-${n+1} '${partition.regex}'
        #end for
        --replicates '$replicates'
        --weight '$weight'
        --use-bootstrap '$use_bootstrap'
        --output '$sm19_output' > sm19_stdout.md
        
        ; EC=\$? ; [[ -f errors.* ]] && cat errors.* >&2 ; exit \$EC
None
False
Functional tests
name inputs outputs required files
Test-1 input_file: sm19-in1.nhx
partitions_0|label: Blood
partitions_0|regex: B[0-9]+
partitions_1|label: Semen
partitions_1|regex: S[0-9]+
replicates: 1000
weight: 0.2
use_bootstrap: True
 name: value
name: value
 sm19-in1.nhx
value
Test-2 input_file: sm19-in2.nhx
partitions_0|label: Blood
partitions_0|regex: B[0-9]+
partitions_1|label: Semen
partitions_1|regex: S[0-9]+
replicates: 1000
weight: 0.2
use_bootstrap: True
 name: value
name: value
 sm19-in2.nhx
value