Repository revision
34:a809f93e7e6d

Repository 'hyphy_sm19'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19

HyPhy-SM2019 tool metadata
Miscellaneous
HyPhy-SM2019
Partition Tree using Modified Slatkin-Maddison Test
hyphy_sm19
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.47+galaxy0
2.5.47+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.47+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.36+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.31+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.31+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.30+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.29+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.26+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.25+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.24+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.23+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.21+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.17+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.15+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.14+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.12+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.11+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.9+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.8+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.7+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_sm19/hyphy_sm19/2.5.0+galaxy0
hyphy_sm19
Requirements (dependencies defined in the <requirements> tag set)
name version type
hyphy 2.5.47 package
Additional information about this tool
ln -s '$input_file' sm19_input.nhx &&
        
        
        export HYPHY=`which hyphy` &&
        export HYPHY_PATH=`dirname \$HYPHY` &&
        export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../share/hyphy` && hyphy LIBPATH=\$HYPHY_LIB
     \$HYPHY_LIB/TemplateBatchFiles/SM-2019.bf ./sm19_input.nhx
        #for $n, $partition in enumerate($partitions):
            '${partition.label}'
            '${partition.regex}'
        #end for
        $replicates
        --output '$sm19_output' 
        
        ; EC=\$? ; [[ -f errors.* ]] && cat errors.* >&2 ; exit \$EC
None
False
Functional tests
name inputs outputs required files
Test-1 input_file: sm19-in1.nhx
partitions_0|label: Blood
partitions_0|regex: B[0-9]+
partitions_1|label: Semen
partitions_1|regex: S[0-9]+
replicates: 1000
 name: value
 sm19-in1.nhx
value
Test-2 input_file: sm19-in2.nhx
partitions_0|label: Blood
partitions_0|regex: B[0-9]+
partitions_1|label: Semen
partitions_1|regex: S[0-9]+
replicates: 1000
 name: value
 sm19-in2.nhx
value