Repository revision
1:e711d52c7509

Repository 'fastq_combiner'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/fastq_combiner

Combine FASTA and QUAL tool metadata
Miscellaneous
into FASTQ
fastq_combiner
toolshed.g2.bx.psu.edu/repos/devteam/fastq_combiner/fastq_combiner/1.0.1
1.0.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/fastq_combiner/fastq_combiner/1.1.1
toolshed.g2.bx.psu.edu/repos/devteam/fastq_combiner/fastq_combiner/1.0.1 (this tool)
fastq_combiner
Requirements (dependencies defined in the <requirements> tag set)
name version type
galaxy_sequence_utils 1.0.0 package
Functional tests
name inputs outputs required files
Test-1 fasta_file: s2fq_phiX.csfasta
qual_file: s2fq_phiX.qualsolid
force_quality_encoding: None
output_file: combine_phiX_out_1.fastqcssanger
s2fq_phiX.csfasta
s2fq_phiX.qualsolid
combine_phiX_out_1.fastqcssanger
Test-2 fasta_file: s2fq_phiX.csfasta
qual_file: s2fq_phiX.qualsolid
force_quality_encoding: ascii
output_file: combine_phiX_out_2.fastqcssanger
s2fq_phiX.csfasta
s2fq_phiX.qualsolid
combine_phiX_out_2.fastqcssanger
Test-3 fasta_file: fastq_combiner_in_1.fasta
qual_file: fastq_combiner_in_1.qual454
force_quality_encoding: None
output_file: wrapping_as_sanger.fastqsanger
fastq_combiner_in_1.fasta
fastq_combiner_in_1.qual454
wrapping_as_sanger.fastqsanger
Test-4 fasta_file: fastq_combiner_in_1.fasta
qual_file: fastq_combiner_in_1.qual454
force_quality_encoding: decimal
output_file: wrapping_as_sanger_decimal.fastqsanger
fastq_combiner_in_1.fasta
fastq_combiner_in_1.qual454
wrapping_as_sanger_decimal.fastqsanger
Test-5 fasta_file: fastq_combiner_in_1.fasta
qual_file: None
force_quality_encoding: decimal
output_file: fastq_combiner_no_qual_decimal_out_1.fastqsanger
fastq_combiner_in_1.fasta
fastq_combiner_no_qual_decimal_out_1.fastqsanger
Test-6 fasta_file: s2fq_phiX.csfasta
qual_file: None
force_quality_encoding: ascii
output_file: fastq_combiner_no_qual_ascii_out_1.fastqcssanger
s2fq_phiX.csfasta
fastq_combiner_no_qual_ascii_out_1.fastqcssanger