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Repository revision

Revision: 6:d9ce554da9b4

Repository 'hmmer_jackhmmer'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/hmmer_jackhmmer

jackhmmer tool metadata

Miscellaneous

Name: jackhmmer

Description: iteratively search a protein sequence against a protein database (PSIBLAST-like)

Id: hmmer_jackhmmer

Guid: toolshed.g2.bx.psu.edu/repos/iuc/hmmer_jackhmmer/hmmer_jackhmmer/3.3+galaxy1

Version: 3.3+galaxy1

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_jackhmmer/hmmer_jackhmmer/3.3.2+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_jackhmmer/hmmer_jackhmmer/3.3+galaxy1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_jackhmmer/hmmer_jackhmmer/3.3

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_jackhmmer/hmmer_jackhmmer/3.2

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_jackhmmer/hmmer_jackhmmer/3.1b2

toolshed.g2.bx.psu.edu/repos/iuc/hmmer_jackhmmer/hmmer_jackhmmer/0.1.0

hmmer_jackhmmer

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hmmer

3.3

package

Functional tests

name

inputs

outputs

required files

Test-1

seqfile: uniprot_matches.fasta
seqdb: globins45.fa
notextw: True
seed: 4

name: value
name: value
name: value

uniprot_matches.fasta
globins45.fa
value

Test-2

seqfile: uniprot_matches.fasta
seqdb: globins45.fa
oformat:
notextw: True
seed: 4

name: value

uniprot_matches.fasta
globins45.fa
value