| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/get_hrun/get_hrun/1.0+galaxy0 (this tool) |
| get_hrun |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| pyfaidx | 0.5.9.2 | package |
| pyvcf | 0.6.8 | package |
| samtools | 1.11 | package |
| Additional information about this tool |
ln -s '${reference}' ref.fa &&
samtools faidx ref.fa &&
python '${__tool_directory__}/get_hrun.py' --reference ref.fa --in-vcf '${in_vcf}' --out-vcf '${out_vcf}'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in_vcf: in.vcf reference: reference.fasta |
name: value |
in.vcf reference.fasta value |