| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/slamdunk/alleyoop/0.4.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/slamdunk/alleyoop/0.4.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/slamdunk/alleyoop/0.3.3 |
| alleyoop |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| slamdunk | 0.4.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
Reference: actb.bed reference_source|reference_source_selector: history l: 100 reads: ['reads1.bam', 'reads2.bam'] mq: 27 count_tsvs: ['reads1_tcount.tsv', 'reads2_tcount.tsv'] reference_source|ref_file: ref.fa variants: ['reads1_snp.vcf', 'reads2_snp.vcf'] |
ref.fa actb.bed reads1.bam reads2.bam reads1_tcount.tsv reads2_tcount.tsv reads1_snp.vcf reads2_snp.vcf |
|
| Test-2 |
Reference: actb.bed reference_source|reference_source_selector: history l: 100 reads: ['reads1.bam', 'reads2.bam'] mq: 27 count_tsvs: ['reads1_tcount.tsv', 'reads2_tcount.tsv'] reference_source|ref_file: ref.fa variants: ['reads1_snp.vcf', 'reads2_snp.vcf'] bams: True |
ref.fa actb.bed reads1.bam reads2.bam reads1_tcount.tsv reads2_tcount.tsv reads1_snp.vcf reads2_snp.vcf |