| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.3.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.3.1 (this tool) |
| lofreq_filter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| lofreq | 2.1.3.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
filter_by_type|qual|indelqual_filter|indelqual_thresh: 20 invcf: call-out2.vcf filter_by_type|qual|snvqual_filter|snvqual: min-phred filter_by_type|qual|indelqual_filter|indelqual: min-phred filter_by_type|qual|snvqual_filter|snvqual_thresh: 38 |
attributes: name |
call-out2.vcf name |
| Test-2 |
filter_by_type|qual|snvqual_filter|snvqual_mtc: bonf filter_by_type|qual|snvqual_filter|snvqual: mtc filter_by_type|keep_only: --only-snvs filter_by_type|qual|snvqual_filter|snvqual_alpha: 0.01 invcf: call-out2.vcf filter_by_type|qual|snvqual_filter|snvqual_ntests: 66 |
attributes: name |
call-out2.vcf name |
| Test-3 |
flag_or_drop: --print-all filter_by_type|qual|snvqual_filter|snvqual_thresh: 38 filter_by_type|qual|indelqual_filter|indelqual_thresh: 20 invcf: call-out2.vcf filter_by_type|qual|indelqual_filter|indelqual: min-phred filter_by_type|qual|snvqual_filter|snvqual: min-phred |
attributes: name |
call-out2.vcf name |