Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.6+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.5+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.3.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.2.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.1.0 |
IDPosteriorErrorProbability |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
openms | 2.5 | package |
openms-thirdparty | 2.5 | package |
blast | 2.9.0 | package |
openjdk | 8.0.192 | package |
ctdopts | 1.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
in: IDPosteriorErrorProbability_Mascot_input.idXML split_charge: False top_hits_only: False ignore_bad_data: False prob_correct: False fit_algorithm|number_of_bins: 100 fit_algorithm|incorrectly_assigned: Gumbel fit_algorithm|max_nr_iterations: 1000 fit_algorithm|neg_log_delta: 6 fit_algorithm|outlier_handling: ignore_iqr_outliers adv_opts_cond|fdr_for_targets_smaller: 0.05 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDPosteriorErrorProbability_Mascot_input.idXML value |
Test-2 |
in: IDPosteriorErrorProbability_XTandem_input.idXML split_charge: False top_hits_only: False ignore_bad_data: False prob_correct: False fit_algorithm|number_of_bins: 100 fit_algorithm|incorrectly_assigned: Gumbel fit_algorithm|max_nr_iterations: 1000 fit_algorithm|neg_log_delta: 6 fit_algorithm|outlier_handling: ignore_iqr_outliers adv_opts_cond|fdr_for_targets_smaller: 0.05 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDPosteriorErrorProbability_XTandem_input.idXML value |
Test-3 |
in: IDPosteriorErrorProbability_OMSSA_input.idXML split_charge: False top_hits_only: False ignore_bad_data: False prob_correct: False fit_algorithm|number_of_bins: 100 fit_algorithm|incorrectly_assigned: Gumbel fit_algorithm|max_nr_iterations: 1000 fit_algorithm|neg_log_delta: 6 fit_algorithm|outlier_handling: ignore_iqr_outliers adv_opts_cond|fdr_for_targets_smaller: 0.05 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDPosteriorErrorProbability_OMSSA_input.idXML value |
Test-4 |
in: IDPosteriorErrorProbability_OMSSA_input2.idXML split_charge: True top_hits_only: False ignore_bad_data: False prob_correct: False fit_algorithm|number_of_bins: 100 fit_algorithm|incorrectly_assigned: Gumbel fit_algorithm|max_nr_iterations: 1000 fit_algorithm|neg_log_delta: 6 fit_algorithm|outlier_handling: ignore_iqr_outliers adv_opts_cond|fdr_for_targets_smaller: 0.05 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDPosteriorErrorProbability_OMSSA_input2.idXML value |
Test-5 |
in: IDPosteriorErrorProbability_XTandem_input2.idXML split_charge: True top_hits_only: False ignore_bad_data: False prob_correct: False fit_algorithm|number_of_bins: 100 fit_algorithm|incorrectly_assigned: Gumbel fit_algorithm|max_nr_iterations: 1000 fit_algorithm|neg_log_delta: 6 fit_algorithm|outlier_handling: ignore_iqr_outliers adv_opts_cond|fdr_for_targets_smaller: 0.05 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDPosteriorErrorProbability_XTandem_input2.idXML value |
Test-6 |
in: IDPosteriorErrorProbability_Mascot_input2.idXML split_charge: True top_hits_only: False ignore_bad_data: False prob_correct: False fit_algorithm|number_of_bins: 100 fit_algorithm|incorrectly_assigned: Gumbel fit_algorithm|max_nr_iterations: 1000 fit_algorithm|neg_log_delta: 6 fit_algorithm|outlier_handling: ignore_iqr_outliers adv_opts_cond|fdr_for_targets_smaller: 0.05 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDPosteriorErrorProbability_Mascot_input2.idXML value |
Test-7 |
in: IDPosteriorErrorProbability_bad_data.idXML split_charge: False top_hits_only: False ignore_bad_data: True prob_correct: False fit_algorithm|number_of_bins: 100 fit_algorithm|incorrectly_assigned: Gumbel fit_algorithm|max_nr_iterations: 1000 fit_algorithm|neg_log_delta: 6 fit_algorithm|outlier_handling: ignore_iqr_outliers adv_opts_cond|fdr_for_targets_smaller: 0.05 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDPosteriorErrorProbability_bad_data.idXML value |
Test-8 |
in: IDPosteriorErrorProbability_OMSSA_input.idXML split_charge: False top_hits_only: False ignore_bad_data: False prob_correct: True fit_algorithm|number_of_bins: 100 fit_algorithm|incorrectly_assigned: Gumbel fit_algorithm|max_nr_iterations: 1000 fit_algorithm|neg_log_delta: 6 fit_algorithm|outlier_handling: ignore_iqr_outliers adv_opts_cond|fdr_for_targets_smaller: 0.05 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDPosteriorErrorProbability_OMSSA_input.idXML value |