| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_variant_select/2.8.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_variant_select/2.8.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/gatk2/gatk2_variant_select/0.0.7 |
| gatk2_variant_select |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| gatk2 | not provided | package |
| samtools | 0.1.19 | package |
| picard | 1.56.0 | package |
| GATK2_PATH | not provided | set_environment |
| GATK2_SITE_OPTIONS | not provided | set_environment |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
exclude_filtered: None gatk_param_type|gatk_param_type_selector: basic input_concordance: None reference_source|reference_source_selector: history input_discordance: None analysis_param_type|analysis_param_type_selector: basic reference_source|input_variant: gatk/gatk_variant_annotator/gatk_variant_annotator_out_1.vcf reference_source|ref_file: phiX.fasta |
output_vcf: gatk_variant_select_out_1.vcf output_log: gatk_variant_select_out_1.log.contains |
gatk/gatk_variant_annotator/gatk_variant_annotator_out_1.vcf phiX.fasta gatk/gatk_variant_select/gatk_variant_select_out_1.vcf gatk/gatk_variant_select/gatk_variant_select_out_1.log.contains |