| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.36.1.0 |
| mothur_unique_seqs |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$names' names.dat &&
ln -s '$fasta' fasta.dat &&
echo 'unique.seqs(
#if $names.is_of_type('mothur.names'):
name=names.dat,
#elif $names.is_of_type('mothur.count_table'):
count=names.dat,
#end if
fasta=fasta.dat,
format=$format
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fasta: amazon.fasta names: amazon1.names format: name savelog: True |
name: value name: value name: value |
amazon.fasta amazon1.names value |
| Test-2 |
fasta: amazon.unique.fasta names: amazon.count_table savelog: True |
name: value name: value name: value |
amazon.unique.fasta amazon.count_table value |
| Test-3 |
fasta: amazon.fasta format: name savelog: True |
name: value name: value name: value |
amazon.fasta value |