Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_cooccurrence/mothur_cooccurrence/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_cooccurrence/mothur_cooccurrence/1.36.1.0 |
mothur_cooccurrence |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$otu' otu.dat && echo 'cooccurrence( shared=otu.dat, metric=$metric, matrixmodel=$matrixmodel, iters=$iters #if $label: ,label=${ str($label).replace(",","-") } #end if #if $groups: ,groups=${ str($groups).replace(",","-") } #end if )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
otu: amazon.an.shared savelog: True |
name: value name: value |
amazon.an.shared value |
Test-2 |
otu: amazon.an.shared metric: vratio groups: ['forest', 'pasture'] label: ['0.05', '0.22', '0.41'] savelog: True |
name: value name: value |
amazon.an.shared value |