Repository revision
8:013e53ccc7ac

Repository 'hicexplorer_chicplotviewpoint'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint

chicPlotViewpoint tool metadata
Miscellaneous
creates plots for viewpoints
hicexplorer_chicplotviewpoint
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.7.2+galaxy0
3.7.2+galaxy0
chicPlotViewpoint --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.7.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.6+galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.3.1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.3.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.3.1.0
hicexplorer_chicplotviewpoint
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.7.2 package
Functional tests
name inputs outputs required files
Test-1 interactionFile: cHi-C/chicViewpoint/two_matrices.hdf5
differentialFile: cHi-C/chicDifferentialTest/differential.hdf5
significantInteractionFile: cHi-C/chicSignificantInteractions/significantInteractions_dual.hdf5
backgroundModelFile: cHi-C/background.txt
combinationMode_conditional|combinationMode_selector: dual
pvalue: True
xFold: 1.5
truncateZeroPvalues: True
name: value
cHi-C/chicViewpoint/two_matrices.hdf5
cHi-C/chicDifferentialTest/differential.hdf5
cHi-C/chicSignificantInteractions/significantInteractions_dual.hdf5
cHi-C/background.txt
value