Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.7.2+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.6+galaxy1 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.6+galaxy0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.3.1 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.3.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.3.1.0 |
hicexplorer_chicplotviewpoint |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
hicexplorer | 3.7.2 | package |
Additional information about this tool |
#import re chicPlotViewpoint --interactionFile '$interactionFile' #if $differentialFile: --differentialTestResult '$differentialFile' #end if #if $significantInteractionFile: --significantInteractions '$significantInteractionFile' $plotSignificantInteractions #end if --range $rangeUpstream $rangeDownstream #if $backgroundModelFile: --backgroundModelFile '$backgroundModelFile' #end if --combinationMode $combinationMode_conditional.combinationMode_selector #if $combinationMode_conditional.combinationMode_selector == 'oneGene': --combinationName $combinationMode_conditional.geneName #end if #if $dpi: --dpi $dpi #end if #if $maxPValue: --maxPValue $maxPValue #end if #if $minPValue: --minPValue $minPValue #end if #if $colormap: --colorMapPvalue $colormap #end if $pvalue #if $xFold: --xFold $xFold #end if --colorList $colorList --threads \${GALAXY_SLOTS:-4} $truncateZeroPvalues -o plots.tar.gz
Functional tests |
name | inputs | outputs | required files |
Test-1 |
interactionFile: cHi-C/chicViewpoint/two_matrices.hdf5 differentialFile: cHi-C/chicDifferentialTest/differential.hdf5 significantInteractionFile: cHi-C/chicSignificantInteractions/significantInteractions_dual.hdf5 backgroundModelFile: cHi-C/background.txt combinationMode_conditional|combinationMode_selector: dual pvalue: True xFold: 1.5 truncateZeroPvalues: True |
name: value |
cHi-C/chicViewpoint/two_matrices.hdf5 cHi-C/chicDifferentialTest/differential.hdf5 cHi-C/chicSignificantInteractions/significantInteractions_dual.hdf5 cHi-C/background.txt value |