Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.6+galaxy0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.3.1 (this tool) |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.3.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.2.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.4.1.0 |
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicplotviewpoint/hicexplorer_chicplotviewpoint/3.3.1.0 |
hicexplorer_chicplotviewpoint |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
hicexplorer | 3.4.3 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
tar_input_conditional|interactionFiles: ['cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt', 'cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt', 'cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt'] tar_input_conditional|differentialFiles: ['cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt', 'cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt', 'cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt'] tar_input_conditional|significantFiles: ['cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt', 'cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt', 'cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt', 'cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt', 'cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt', 'cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt'] tar_input_conditional|tar_input_selector: interval_input backgroundModelFile: cHi-C/background.txt batchmode_conditional|interactionFilesOrderFile: cHi-C/chicViewpoint/fileNames_two_matrices.txt batchmode_conditional|differentialFilesOrderFile: cHi-C/chicDifferentialTest/rejectedFilesList.txt batchmode_conditional|significantInteractionFilesOrderFile: cHi-C/chicSignificantInteractions/output_5_significant_files.txt batchmode_conditional|computeSampleNumber: 2 batchmode_conditional|batchmode_selector: optionBatchmode pvalue: True xFold: 1.5 truncateZeroPvalues: True |
cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt cHi-C/background.txt cHi-C/chicViewpoint/fileNames_two_matrices.txt cHi-C/chicDifferentialTest/rejectedFilesList.txt cHi-C/chicSignificantInteractions/output_5_significant_files.txt |
|
Test-2 |
tar_input_conditional|interactionFiles: cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt tar_input_conditional|tar_input_selector: interval_input batchmode_conditional|batchmode_selector: optionSinglemode |
cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt |
|
Test-3 |
tar_input_conditional|interactionFiles: cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt tar_input_conditional|tar_input_selector: interval_input batchmode_conditional|batchmode_selector: optionSinglemode |
cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt |
|
Test-4 |
tar_input_conditional|interactionFiles: ['cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt', 'cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt', 'cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt', 'cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt'] tar_input_conditional|differentialFiles: ['cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt', 'cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt', 'cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt'] tar_input_conditional|significantFiles: ['cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt', 'cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt', 'cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt', 'cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt', 'cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt', 'cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt'] tar_input_conditional|tar_input_selector: interval_input backgroundModelFile: cHi-C/background.txt batchmode_conditional|interactionFilesOrderFile: cHi-C/chicViewpoint/fileNames_two_matrices.txt batchmode_conditional|differentialFilesOrderFile: cHi-C/chicDifferentialTest/rejectedFilesList.txt batchmode_conditional|significantInteractionFilesOrderFile: cHi-C/chicSignificantInteractions/output_5_significant_files.txt batchmode_conditional|computeSampleNumber: 2 batchmode_conditional|batchmode_selector: optionBatchmode pvalue: True xFold: 1.5 truncateZeroPvalues: True tar: True |
name: value |
cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.txt cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.txt cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.txt cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.txt cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.txt cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.txt cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.txt cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.txt cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.txt cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_significant_interactions.txt cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_significant_interactions.txt cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_significant_interactions.txt cHi-C/background.txt cHi-C/chicViewpoint/fileNames_two_matrices.txt cHi-C/chicDifferentialTest/rejectedFilesList.txt cHi-C/chicSignificantInteractions/output_5_significant_files.txt value |
Test-5 |
tar_input_conditional|interactionFiles: cHi-C/chicViewpoint/output_1.tar tar_input_conditional|differentialFiles: cHi-C/chicDifferentialTest/batch_mode_fisher_outfile.tar tar_input_conditional|significantFiles: cHi-C/chicSignificantInteractions/significantFilesFolder.tar tar_input_conditional|tar_input_selector: tar_input backgroundModelFile: cHi-C/background.txt batchmode_conditional|interactionFilesOrderFile: cHi-C/chicViewpoint/fileNames_two_matrices.txt batchmode_conditional|differentialFilesOrderFile: cHi-C/chicDifferentialTest/rejectedFilesList.txt batchmode_conditional|significantInteractionFilesOrderFile: cHi-C/chicSignificantInteractions/output_5_significant_files.txt batchmode_conditional|computeSampleNumber: 2 batchmode_conditional|batchmode_selector: optionBatchmode pvalue: True xFold: 1.5 truncateZeroPvalues: True tar: True |
name: value |
cHi-C/chicViewpoint/output_1.tar cHi-C/chicDifferentialTest/batch_mode_fisher_outfile.tar cHi-C/chicSignificantInteractions/significantFilesFolder.tar cHi-C/background.txt cHi-C/chicViewpoint/fileNames_two_matrices.txt cHi-C/chicDifferentialTest/rejectedFilesList.txt cHi-C/chicSignificantInteractions/output_5_significant_files.txt value |