| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/ct_build_cell_ontology_dict/ct_build_cell_ontology_dict/1.1.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/ct_build_cell_ontology_dict/ct_build_cell_ontology_dict/1.1.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/ct_build_cell_ontology_dict/ct_build_cell_ontology_dict/1.0.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/ebi-gxa/ct_build_cell_ontology_dict/ct_build_cell_ontology_dict/1.0.0+galaxy0 |
| ct_build_cell_ontology_dict |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| cell-types-analysis | 0.1.9 | package |
| Additional information about this tool |
mkdir -p input_dir;
#for $sdrf in $input_sdrfs:
cp '$sdrf' input_dir/;
#end for
build_cell_ontology_dict.R --input-dir input_dir --output-dict-path "${output_dict_path}" --output-text-path "${output_txt_path}"
#if $condensed_sdrf
--condensed-sdrf "${condensed_sdrf}"
#end if
#if $barcode_col_name
--barcode-col-name "${barcode_col_name}"
#end if
#if $cell_label_col_name
--cell-label-col-name "${cell_label_col_name}"
#end if
#if $cell_ontology_col_name
--cell-ontology-col-name "${cell_ontology_col_name}"
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_sdrfs: ['SDRFs/E-ENAD-27.condensed-sdrf.tsv', 'SDRFs/ref_condensed_sdrf.tsv', 'SDRFs/E-GEOD-81608.condensed-sdrf.tsv'] condensed_sdrf: True |
name: value |
SDRFs/E-ENAD-27.condensed-sdrf.tsv SDRFs/ref_condensed_sdrf.tsv SDRFs/E-GEOD-81608.condensed-sdrf.tsv value |