Repository revision
3:7554c0df9139

Repository 'locarna_multiple'
hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/locarna_multiple

LocARNA Multiple Aligner tool metadata
Miscellaneous
Multiple Alignment and Folding of RNAs (mlocarna)
locarna_multiple
toolshed.g2.bx.psu.edu/repos/rnateam/locarna_multiple/locarna_multiple/1.9.2.3+galaxy1
1.9.2.3+galaxy1
mlocarna --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/rnateam/locarna_multiple/locarna_multiple/1.9.2.3+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/rnateam/locarna_multiple/locarna_multiple/1.9.0.1
toolshed.g2.bx.psu.edu/repos/rnateam/locarna_multiple/locarna_multiple/1.9.0.0
locarna_multiple
Requirements (dependencies defined in the <requirements> tag set)
name version type
locarna 1.9.2.3 package
r-base 4.2.2 package
Functional tests
name inputs outputs required files
Test-1 input_data_type|input_data: archaea.fa
outputs: ['clustal', 'strict']
stdout_verbosity:
Heuristics|max_diff_mode|max_diff: 20
Heuristics|max_diff_mode|max_diff_mode_selector: max-diff
name: value
name: value
name: value
archaea.fa
value
Test-2 input_data_type|input_data: haca.snoRNA.fa
stdout_verbosity:
name: value
name: value
haca.snoRNA.fa
value
Test-3 input_data_type|input_data: archaea.fa
alignment_mode|alignment_mode_selector: probabilistic
outputs: clustal
stdout_verbosity:
name: value
name: value
archaea.fa
value
Test-4 input_data_type|input_data: archaea.fa
outputs: clustal
stdout_verbosity:
Heuristics|max_diff_mode|max_diff_aln: archaea-ref.aln
Heuristics|max_diff_mode|max_diff: 2
Heuristics|max_diff_mode|max_diff_mode_selector: max-diff-aln
name: value
name: value
archaea.fa
archaea-ref.aln
value