| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_size_histograms/Size_histogram/0.9.9 (this tool) |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_size_histograms/Size_histogram/0.9.8 |
| toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_size_histograms/Size_histogram/0.9.7 |
| Size_histogram |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bowtie | 0.12.7 | package |
| pysam | 0.7.7 | package |
| R | 3.1.2 | package |
| biocbasics | 2.14 | package |
| numpy | 1.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
minquery: 18 global: no refGenomeSource|series_1|norm: 1 refGenomeSource|series_0|input: sample1.srbowtie_out collapsestrands: no maxquery: 30 refGenomeSource|series_2|input: sample3.srbowtie_out refGenomeSource|series_0|norm: 1 refGenomeSource|series_1|input: sample2.srbowtie_out rows_per_page: 10 title: Size distribution xlabel: Size in nucleotides ylabel: Number of reads refGenomeSource|series_2|norm: 1 refGenomeSource|genomeSource: history refGenomeSource|ownFile: transposons.fasta |
size_distribution_dataframe: Size_distribution_dataframe.tab size_PDF: Size_distribution.pdf |
transposons.fasta sample1.srbowtie_out sample2.srbowtie_out sample3.srbowtie_out Size_distribution_dataframe.tab Size_distribution.pdf |