Repository revision
7:477d829d3250

Repository 'infernal'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/infernal

cmalign tool metadata
Miscellaneous
cmalign
Align sequences to a covariance model against a sequence database
infernal_cmalign
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmalign/1.1.2.0
1.1.2.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmalign/1.1.2.0 (this tool)
infernal_cmalign
Requirements (dependencies defined in the <requirements> tag set)
name version type
infernal not provided package
infernal 1.1.2 package
coreutils 8.25 package
Functional tests
name inputs outputs required files
Test-1 cm_opts|cmfile: cmalign_input2_tRNA5.c.cm
cm_opts|cm_opts_selector: histdb
seqdb: cmalign_input_mrum_tRNAs10.fa
outfile: None
cmalign_input_mrum_tRNAs10.fa
cmalign_input2_tRNA5.c.cm