Repository revision
7:477d829d3250

Repository 'infernal'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/infernal

cmsearch tool metadata
Miscellaneous
cmsearch
Search covariance model(s) against a sequence database
infernal_cmsearch
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmsearch/1.1.2.0
1.1.2.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmsearch/1.1.2.0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmsearch/1.1.0.2
infernal_cmsearch
Requirements (dependencies defined in the <requirements> tag set)
name version type
infernal not provided package
infernal 1.1.2 package
coreutils 8.25 package
Functional tests
name inputs outputs required files
Test-1 cm_opts|cmfile: cmsearch_input1.cm
cm_opts|cm_opts_selector: histdb
seqdb: cmsearch_input2.fa
outfile: cmsearch_result.tabular
cmsearch_input2.fa
cmsearch_input1.cm
cmsearch_result.tabular