Repository revision
8:c9e29ac5d099

Repository 'infernal'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/infernal

cmpress tool metadata
Miscellaneous
cmpress
Prepare a covariance model database for cmscan
infernal_cmpress
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmpress/1.1.4+galaxy0
1.1.4+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmpress/1.1.4+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmpress/1.1.2.0
infernal_cmpress
Requirements (dependencies defined in the <requirements> tag set)
name version type
infernal not provided package
infernal 1.1.4 package
coreutils 8.32 package
Additional information about this tool
## CM file from the history or stored as database on disc
    #if str($cm_opts.cm_opts_selector) == "db":
        cmfile_path='$cm_opts.database.fields.path'
    #else:
        ##'$cm_opts.cmfile'
        cmfile_path='$cmfile'
    #end if
    &&
    cmpress -F "\$cmfile_path" &&
    ##cmpress creates four files in the same directory of the cm file
    cd `dirname "\$cmfile_path"` &&
    tar -cvf '$outfile' `basename "\$cmfile_path"`.i1*

    
None
False
False
Functional tests
name inputs outputs required files
Test-1 cm_opts|cmfile: cmpress_input_minifam.cm
cm_opts|cm_opts_selector: histdb
cmpress_input_minifam.cm