| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmstat/1.1.4+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmstat/1.1.0.1 |
| infernal_cmstat |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| infernal | not provided | package |
| infernal | 1.1.4 | package |
| coreutils | 8.32 | package |
| Additional information about this tool |
## a temp file is needed, because the standard tabular output from infernal is not usefull in Galaxy
## it will be converted to a tab delimited file and piped to Galaxy
##temp_tabular_output=\$(mktemp);
cmstat
#if str($cm_opts.cm_opts_selector) == "db":
$cm_opts.database.fields.path
#else:
$cm_opts.cmfile
#end if
> $outfile
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
cm_opts|cmfile: cmstat_input.cm cm_opts|cm_opts_selector: histdb |
name: value |
cmstat_input.cm value |