Repository revision
8:c9e29ac5d099

Repository 'infernal'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/infernal

cmstat tool metadata
Miscellaneous
cmstat
Summary statistics for covariance model
infernal_cmstat
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmstat/1.1.4+galaxy0
1.1.4+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmstat/1.1.4+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmstat/1.1.0.1
infernal_cmstat
Requirements (dependencies defined in the <requirements> tag set)
name version type
infernal not provided package
infernal 1.1.4 package
coreutils 8.32 package
Additional information about this tool
## a temp file is needed, because the standard tabular output from infernal is not usefull in Galaxy
        ## it will be converted to a tab delimited file and piped to Galaxy
        ##temp_tabular_output=\$(mktemp);

        cmstat
            #if str($cm_opts.cm_opts_selector) == "db":
                $cm_opts.database.fields.path
            #else:
                $cm_opts.cmfile
            #end if

            > $outfile



    
None
False
False
Functional tests
name inputs outputs required files
Test-1 cm_opts|cmfile: cmstat_input.cm
cm_opts|cm_opts_selector: histdb
name: value
cmstat_input.cm
value