| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/nanocompore_db/nanocompore_db/1.0.0rc3.post2+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/nanocompore_db/nanocompore_db/1.0.0rc3.post2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/nanocompore_db/nanocompore_db/1.0.0rc3.post2+galaxy0 |
| nanocompore_db |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| nanocompore | 1.0.0rc3.post2 | package |
| tar | 1.32 | package |
| Additional information about this tool |
mkdir -p results plots &&
tar -xf '$db' --strip-components 1 -C results/ &&
python '$__tool_directory__/NanocomporeDB_process.py'
--db-path 'results/out_SampComp.db'
--ref-fasta '$reference'
--annotation-bed '$annotation'
--pvalue-types '$pvalue_types'
--pvalue-threshold $pvalue_threshold
--out-dir ./plots/
$bedgraph
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference: reference.fa annotation: annot.bed db: DB.tar |
reference.fa annot.bed DB.tar |
|
| Test-2 |
reference: reference.fa annotation: annot.bed db: DB.tar pvalue_types: GMM_logit_pvalue,KS_dwell_pvalue bedgraph: True |
reference.fa annot.bed DB.tar |