| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/funannotate_predict/funannotate_predict/1.8.15+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/funannotate_predict/funannotate_predict/1.8.15+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/funannotate_predict/funannotate_predict/1.8.9+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/funannotate_predict/funannotate_predict/1.8.9+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/funannotate_predict/funannotate_predict/1.8.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/funannotate_predict/funannotate_predict/1.8.9+galaxy0 |
| funannotate_predict |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| funannotate | 1.8.15 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: genome_masked.fa database: 2021-07-20-120000 organism|species: Genus species busco|busco_db: insecta busco|busco_seed_species: fly augustus|min_training_models: 3 outputs: ['gbk', 'tbl', 'gff3', 'proteins_fa', 'mrna_transcripts_fa', 'cds_transcripts_fa', 'tbl2asn_error', 'tbl2asn_report', 'tbl2asn_validation', 'stats'] |
name: value name: value name: value name: value name: value name: value name: value name: value name: value name: value |
genome_masked.fa value |
| Test-2 |
input: genome_masked.fa database: 2021-07-20-120000 organism|species: Genus species busco|busco_db: insecta busco|busco_seed_species: fly augustus|augustus_species: fly outputs: ['gbk', 'tbl', 'gff3', 'proteins_fa', 'mrna_transcripts_fa', 'cds_transcripts_fa', 'tbl2asn_error', 'tbl2asn_report', 'tbl2asn_validation', 'stats'] uglyTestingHack: true |
name: value name: value name: value name: value name: value name: value |
genome_masked.fa value |
| Test-3 |
input: genome_masked.fa database: 2021-07-20-120000 organism|species: Genus species evidences|rna_bam: SRR7458692.bam evidences|transcript_evidence: predict_scratch/Genus_species.mrna-transcripts.fa evidences|prot_evidence|protein_evidence: predict_scratch/Genus_species.proteins.fa evidences|prot_evidence|prot_evidence_source: custom busco|busco_db: insecta busco|busco_seed_species: fly augustus|min_training_models: 3 outputs: ['gbk', 'tbl', 'gff3', 'proteins_fa', 'mrna_transcripts_fa', 'cds_transcripts_fa', 'tbl2asn_error', 'tbl2asn_report', 'tbl2asn_validation', 'stats'] |
name: value name: value name: value name: value name: value name: value |
genome_masked.fa SRR7458692.bam predict_scratch/Genus_species.mrna-transcripts.fa predict_scratch/Genus_species.proteins.fa value |
| Test-4 |
input: genome_masked.fa database: 2021-07-20-120000 organism|species: Genus species evidences|prot_evidence|protein_evidence: predict_scratch/Genus_species.proteins.fa evidences|prot_evidence|prot_evidence_source: custom busco|busco_db: insecta busco|busco_seed_species: fly augustus|min_training_models: 3 outputs: ['gbk', 'tbl', 'gff3', 'proteins_fa', 'mrna_transcripts_fa', 'cds_transcripts_fa', 'tbl2asn_error', 'tbl2asn_report', 'tbl2asn_validation', 'stats'] |
name: value name: value name: value name: value name: value name: value |
genome_masked.fa predict_scratch/Genus_species.proteins.fa value |