Repository revision
30:d19920419c78

Repository 'scanpy_find_cluster'
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster

Scanpy FindCluster tool metadata
Miscellaneous
based on community detection on KNN graph
scanpy_find_cluster
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.8.1+galaxy93
1.8.1+galaxy93
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.9.3+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.8.1+galaxy93 (this tool)
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.8.1+galaxy9
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.8.1+3+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.8.1+2+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.8.1+1+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.8.1+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.7.2+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.6.0+galaxy4
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.6.0+galaxy3
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.6.0+galaxy2
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.6.0+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.6.0+galaxy0
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.4.3+galaxy11
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.4.3+galaxy10
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.4.3+galaxy9
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.4.3+galaxy8
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.4.3+galaxy6
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.4.3+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.4.2+galaxy1
toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.3.2+galaxy1
scanpy_find_cluster
Requirements (dependencies defined in the <requirements> tag set)
name version type
scanpy-scripts 1.1.6 package
Functional tests
name inputs outputs required files
Test-1 input_obj_file: compute_graph.h5
input_format: anndata
output_format: anndata
settings|resolution_file: resolution.txt
settings|random_seed: 0
settings|default: False
name: value
name: value
compute_graph.h5
resolution.txt
value
Test-2 input_obj_file: compute_graph.h5
input_format: anndata
output_format: anndata
settings|resolution: 1.0
settings|random_seed: 0
settings|default: False
name: value
name: value
compute_graph.h5
value
Test-3 input_obj_file: compute_graph.h5
input_format: anndata
output_format: anndata
method: louvain
settings|key_added: METHOD_RESOLUTION
settings|resolution: 1.0
settings|random_seed: 0
settings|default: False
name: value
name: value
compute_graph.h5
value