| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/barrnap/barrnap/1.2.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/barrnap/barrnap/1.2.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/barrnap/barrnap/1.2.0 |
| barrnap |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| barrnap | 0.9 | package |
| Additional information about this tool |
## symlink fasta because tool generates .fai
ln -s '$fasta_file' query.fa &&
barrnap
--quiet
--threads \${GALAXY_SLOTS:-1}
--reject $reject
--lencutoff $lencutoff
--evalue $evalue
#if $incseq
--incseq
#end if
#if $outseq
--outseq '$fasta_out'
#end if
--kingdom $kingdom
query.fa
> '$gff'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fasta_file: bacteria.fna kingdom: bac |
name: value |
bacteria.fna value |
| Test-2 |
fasta_file: small.fna kingdom: bac incseq: True |
name: value |
small.fna value |
| Test-3 |
fasta_file: small.fna kingdom: bac evalue: 0.00000001 |
name: value |
small.fna value |
| Test-4 |
fasta_file: small.fna kingdom: bac outseq: True |
name: value name: value |
small.fna value |