Repository revision
3:6274184a8b84

Repository 'affy2vcf'
hg clone https://toolshed.g2.bx.psu.edu/repos/greg/affy2vcf

Convert Affymetrix tool metadata
Miscellaneous
genotype calls and intensities to VCF
affr2vcf
toolshed.g2.bx.psu.edu/repos/greg/affy2vcf/affr2vcf/1.9
1.9
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/greg/affy2vcf/affr2vcf/1.9 (this tool)
affr2vcf
Requirements (dependencies defined in the <requirements> tag set)
name version type
bcftools-gtc2vcf-plugin 1.9 package
Functional tests
name inputs outputs required files
Test-1 confidences: sub50_axiomgt1.confidences.txt
reference_genome_source_cond|reference_genome_source: history
calls: sub50_axiomgt1.calls.txt
snp_posteriors: sub50_axiomgt1.snp_posteriors.txt
annot: axiom_acropsnp_coral_annotation.r1.csv
summary: sub50_axiomgt1.summary.txt
report: axiomgt1.report.txt
reference_genome_source_cond|history_item: sub50_adig_genome.fasta
attributes: name
axiom_acropsnp_coral_annotation.r1.csv
sub50_axiomgt1.summary.txt
sub50_axiomgt1.snp_posteriors.txt
axiomgt1.report.txt
sub50_axiomgt1.confidences.txt
sub50_axiomgt1.calls.txt
sub50_adig_genome.fasta
name