| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.3.7.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.2.8.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.2.8 |
| toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.2.4.1 |
| trim_galore |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| cutadapt | 1.8 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
params|report: true params|settingsType: custom singlePaired|sPaired: single singlePaired|input_singles: sanger_full_range_original_sanger.fastqsanger |
trimmed_reads_single: sanger_full_range_results1.fastqsanger report_file: sanger_full_range_report_results1.txt |
sanger_full_range_original_sanger.fastqsanger sanger_full_range_results1.fastqsanger sanger_full_range_report_results1.txt |
| Test-2 |
params|report: true singlePaired|input_mate2: bwa-mem-fastq2.fq singlePaired|input_mate1: bwa-mem-fastq1.fq params|settingsType: custom singlePaired|sPaired: paired |
trimmed_reads_pair1: paired_example_pair1_results2.fastqsanger trimmed_reads_pair2: paired_example_pair2_results2.fastqsanger report_file: paired_example_results2.txt |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq paired_example_pair1_results2.fastqsanger paired_example_pair2_results2.fastqsanger paired_example_results2.txt |
| Test-3 |
params|report: true params|settingsType: custom singlePaired|input_mate_pairs: paired collection singlePaired|sPaired: paired_collection |
report_file: paired_collection_example_results3.txt |
bwa-mem-fastq1.fq bwa-mem-fastq2.fq paired_collection_example_results3.txt |