| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/anton/bamtools/bamtools/0.0.1 (this tool) |
| bamtools |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bamtools | 2.3.0_2d7685d2ae | package |
| samtools | 0.1.18 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
analysis_type|format_type|format_type_selector: pileup analysis_type|analysis_type_selector: convert input_bams_0|input_bam: bamtools-input1.bam analysis_type|format_type|reference_source|ref_file: bamtools-fasta.fa analysis_type|format_type|reference_source|reference_source_selector: history analysis_type|format_type|mapqual: true |
output_bam: bamtools-convert-pileup.pu |
bamtools-input1.bam bamtools-fasta.fa bamtools-convert-pileup.pu |
| Test-2 |
analysis_type|analysis_type_selector: count input_bams_0|input_bam: bamtools-input1.bam |
output_bam: bamtools-count.tab |
bamtools-input1.bam bamtools-count.tab |
| Test-3 |
analysis_type|analysis_type_selector: coverage input_bams_0|input_bam: bamtools-input1.bam |
output_bam: bamtools-coverage.tab |
bamtools-input1.bam bamtools-coverage.tab |
| Test-4 |
analysis_type|analysis_type_selector: header input_bams_0|input_bam: bamtools-input1.bam |
output_bam: bamtools-header.txt |
bamtools-input1.bam bamtools-header.txt |