| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/spades_plasmidspades/spades_plasmidspades/3.15.5+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/spades_plasmidspades/spades_plasmidspades/3.15.4+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/spades_plasmidspades/spades_plasmidspades/3.15.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/spades_plasmidspades/spades_plasmidspades/3.15.4+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/spades_plasmidspades/spades_plasmidspades/3.15.3+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/spades_plasmidspades/spades_plasmidspades/3.15.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/spades_plasmidspades/spades_plasmidspades/3.15.3+galaxy0 |
| spades_plasmidspades |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| spades | 3.15.4 | package |
| zip | 3.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
singlePaired|input1: pl1.fq.gz singlePaired|input2: pl2.fq.gz singlePaired|sPaired: paired |
name: value name: value name: value name: value |
pl1.fq.gz pl2.fq.gz value |
| Test-2 |
singlePaired|input1: pl1.fq.gz singlePaired|input2: pl2.fq.gz singlePaired|sPaired: paired phred_offset: 33 optional_output: ['ag', 'ags', 'cn', 'cp', 'cr', 'cs', 'l', 'sc', 'sp', 'ss'] |
name: value name: value name: value name: value name: value name: value name: value name: value name: value |
pl1.fq.gz pl2.fq.gz value |
| Test-3 |
operation_mode: --only-assembler additional_reads|singlePaired|input1: pl1.fq.gz additional_reads|singlePaired|input2: pl2.fq.gz additional_reads|singlePaired|sPaired: paired additional_reads|selector: true mode_sel: --careful optional_output: l |
name: value |
pl1.fq.gz pl2.fq.gz value |
| Test-4 |
singlePaired|input1: pl1.fq.gz singlePaired|input2: pl2.fq.gz singlePaired|sPaired: paired mode_sel: --careful optional_output: l |
name: value |
pl1.fq.gz pl2.fq.gz value |
| Test-5 |
operation_mode: --only-error-correction singlePaired|input1: pl1.fq.gz singlePaired|input2: pl2.fq.gz singlePaired|sPaired: paired optional_output: ['cr', 'l'] |
name: value |
pl1.fq.gz pl2.fq.gz value |
| Test-6 |
operation_mode: --only-error-correction singlePaired|input1: pl1.fq.gz singlePaired|input2: pl2.fq.gz singlePaired|sPaired: paired optional_output: ['cr', 'l'] |
name: value |
pl1.fq.gz pl2.fq.gz value |
| Test-7 |
singlePaired|input1: pl1.fq.gz singlePaired|input2: pl2.fq.gz singlePaired|sPaired: paired arf|nanopore: ecoli_1K.fastq.gz arf|pacbio: ecoli_1K.fastq.gz arf|sanger: ecoli_1K.fastq.gz arf|untrusted_contigs: ecoli_1K.fasta.gz mode_sel: --careful optional_output: ['cr', 'l'] |
name: value |
pl1.fq.gz pl2.fq.gz ecoli_1K.fastq.gz ecoli_1K.fasta.gz value |