Repository revision
6:be533bd1ad65

Repository 'qiime_pick_open_reference_otus'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_open_reference_otus

Perform open-reference OTU picking tool metadata
Miscellaneous
(pick_open_reference_otus)
qiime_pick_open_reference_otus
toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_open_reference_otus/qiime_pick_open_reference_otus/1.9.1.0
1.9.1.0
pick_open_reference_otus.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_open_reference_otus/qiime_pick_open_reference_otus/1.9.1.0 (this tool)
qiime_pick_open_reference_otus
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime 1.9.1 package
Functional tests
name inputs outputs required files
Test-1 ref_sequences|selector: history
minimum_failure_threshold: 100000
suppress_align_and_tree: False
otu_picking_method: uclust
min_otu_size: 2
ref_sequences|reference_fp: pick_open_reference_otus/gg_13_8_79_otus.fasta
percent_subsample: 0.001
new_ref_set_id: New
prefilter|use_prefilter: false
input_fps: pick_open_reference_otus/sequences.fasta
suppress_taxonomy_assignment: False
suppress_step4: False
parallel: True
prefilter_percent_id: 0.0
attributes: name
attributes: name
attributes: name
attributes: name
attributes: name
pick_open_reference_otus/sequences.fasta
pick_open_reference_otus/gg_13_8_79_otus.fasta
name
Test-2 ref_sequences|selector: history
minimum_failure_threshold: 100000
suppress_align_and_tree: True
otu_picking_method: uclust
min_otu_size: 3
ref_sequences|reference_fp: pick_open_reference_otus/gg_13_8_79_otus.fasta
percent_subsample: 0.001
new_ref_set_id: New
prefilter|use_prefilter: false
input_fps: pick_open_reference_otus/sequences.fasta
suppress_taxonomy_assignment: True
suppress_step4: False
parallel: True
prefilter_percent_id: 0.0
attributes: name
attributes: name
attributes: name
attributes: name
pick_open_reference_otus/sequences.fasta
pick_open_reference_otus/gg_13_8_79_otus.fasta
name
Test-3 ref_sequences|selector: history
minimum_failure_threshold: 100000
suppress_align_and_tree: False
otu_picking_method: uclust
min_otu_size: 10
ref_sequences|reference_fp: pick_open_reference_otus/gg_13_8_79_otus.fasta
percent_subsample: 0.001
new_ref_set_id: New
prefilter|use_prefilter: false
input_fps: pick_open_reference_otus/sequences.fasta
suppress_taxonomy_assignment: True
suppress_step4: False
parallel: True
prefilter_percent_id: 0.0
attributes: name
attributes: name
attributes: name
attributes: name
attributes: name
pick_open_reference_otus/sequences.fasta
pick_open_reference_otus/gg_13_8_79_otus.fasta
name