Galaxy |

Repository revision

Revision: 7:98b53d46e851

Repository 'khmer_extract_partitions'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/khmer_extract_partitions

khmer: Extract partitions tool metadata

Miscellaneous

Name: khmer: Extract partitions

Description: Separate sequences that are annotated with partitions into grouped files

Id: khmer_extract_partitions

Guid: toolshed.g2.bx.psu.edu/repos/iuc/khmer_extract_partitions/khmer_extract_partitions/3.0.0a3+galaxy2

Version: 3.0.0a3+galaxy2

Version command string: extract-partitions.py --version 2>&1 | tail -n 1 | cut -d ' ' -f 2

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/khmer_extract_partitions/khmer_extract_partitions/3.0.0a3+galaxy2 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/khmer_extract_partitions/khmer_extract_partitions/3.0.0a3+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/khmer_extract_partitions/khmer_extract_partitions/3.0.0a1.0

toolshed.g2.bx.psu.edu/repos/iuc/khmer_extract_partitions/khmer_extract_partitions/2.0.0

khmer_extract_partitions

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

khmer

3.0.0a3

package

Additional information about this tool

Command:

mkdir -p output &&
cd output &&
extract-partitions.py
--max-size $max_size
--min-partition-size $min_partition_size
$output_unassigned
output
#for input in $inputs
    $input
#end for

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

inputs: random-20-a.fa.part

random-20-a.fa.part