| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapteronline/MascotAdapterOnline/3.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapteronline/MascotAdapterOnline/2.8+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapteronline/MascotAdapterOnline/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapteronline/MascotAdapterOnline/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapteronline/MascotAdapterOnline/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapteronline/MascotAdapterOnline/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mascotadapteronline/MascotAdapterOnline/2.1.0 |
| MascotAdapterOnline |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.8 | package |
| openms-thirdparty | 2.8 | package |
| omssa | 2.1.9 | package |
| blast | 2.13.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: spectra_comet.mzML Mascot_parameters|database: SwissProt Mascot_parameters|search_type: MIS Mascot_parameters|enzyme: Trypsin Mascot_parameters|instrument: Default Mascot_parameters|missed_cleavages: 1 Mascot_parameters|precursor_mass_tolerance: 3.0 Mascot_parameters|precursor_error_units: Da Mascot_parameters|fragment_mass_tolerance: 0.3 Mascot_parameters|fragment_error_units: Da Mascot_parameters|charges: 1,2,3 Mascot_parameters|taxonomy: All entries Mascot_parameters|fixed_modifications: None Mascot_parameters|variable_modifications: None Mascot_parameters|special_modifications: Cation:Na (DE),Deamidated (NQ),Oxidation (HW),Phospho (ST),Sulfo (ST) Mascot_parameters|mass_type: monoisotopic Mascot_parameters|number_of_hits: 0 Mascot_parameters|skip_spectrum_charges: False Mascot_parameters|decoy: False Mascot_parameters|search_title: OpenMS_search Mascot_parameters|username: OpenMS Mascot_parameters|email: openmsjenkins@gmail.com Mascot_server|hostname: www.matrixscience.com Mascot_server|host_port: 80 Mascot_server|server_path: Mascot_server|timeout: 1500 Mascot_server|boundary: GZWgAaYKjHFeUaLOLEIOMq Mascot_server|use_proxy: False Mascot_server|proxy_host: Mascot_server|proxy_port: 0 Mascot_server|proxy_username: Mascot_server|proxy_password: Mascot_server|login: False Mascot_server|username: Mascot_server|password: Mascot_server|use_ssl: False Mascot_server|export_params: _ignoreionsscorebelow=0&_sigthreshold=0.99&_showsubsets=1&show_same_sets=1&report=0&percolate=0&query_master=0 Mascot_server|skip_export: False Mascot_server|batch_size: 50000 adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
spectra_comet.mzML value |
| Test-2 |
in: spectra_comet.mzML Mascot_parameters|database: SwissProt Mascot_parameters|search_type: MIS Mascot_parameters|enzyme: Trypsin Mascot_parameters|instrument: Default Mascot_parameters|missed_cleavages: 1 Mascot_parameters|precursor_mass_tolerance: 3.0 Mascot_parameters|precursor_error_units: Da Mascot_parameters|fragment_mass_tolerance: 0.3 Mascot_parameters|fragment_error_units: Da Mascot_parameters|charges: 1,2,3 Mascot_parameters|taxonomy: All entries Mascot_parameters|fixed_modifications: None Mascot_parameters|variable_modifications: None Mascot_parameters|special_modifications: Cation:Na (DE),Deamidated (NQ),Oxidation (HW),Phospho (ST),Sulfo (ST) Mascot_parameters|mass_type: monoisotopic Mascot_parameters|number_of_hits: 0 Mascot_parameters|skip_spectrum_charges: False Mascot_parameters|decoy: True Mascot_parameters|search_title: OpenMS_search Mascot_parameters|username: OpenMS Mascot_parameters|email: openmsjenkins@gmail.com Mascot_server|hostname: www.matrixscience.com Mascot_server|host_port: 80 Mascot_server|server_path: Mascot_server|timeout: 1500 Mascot_server|boundary: GZWgAaYKjHFeUaLOLEIOMq Mascot_server|use_proxy: False Mascot_server|proxy_host: Mascot_server|proxy_port: 0 Mascot_server|proxy_username: Mascot_server|proxy_password: Mascot_server|login: False Mascot_server|username: Mascot_server|password: Mascot_server|use_ssl: False Mascot_server|export_params: _ignoreionsscorebelow=0&_sigthreshold=0.99&_showsubsets=1&show_same_sets=1&report=0&percolate=0&query_master=0 Mascot_server|skip_export: False Mascot_server|batch_size: 50000 adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
spectra_comet.mzML value |