| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.1.0 |
| IDMapper |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.6 | package |
| openms-thirdparty | 2.6 | package |
| blast | 2.9.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
id: IDMapper_1_input.idXML in: IDMapper_1_input.featureXML rt_tolerance: 5.0 mz_tolerance: 1.0 mz_measure: Da mz_reference: precursor feature|use_centroid_rt: False feature|use_centroid_mz: False consensus|use_subelements: False consensus|annotate_ids_with_subelements: False adv_opts_cond|ignore_charge: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDMapper_1_input.idXML IDMapper_1_input.featureXML value |
| Test-2 |
id: IDMapper_2_input.idXML in: IDMapper_2_input.consensusXML rt_tolerance: 5.0 mz_tolerance: 1.0 mz_measure: Da mz_reference: precursor feature|use_centroid_rt: False feature|use_centroid_mz: True consensus|use_subelements: False consensus|annotate_ids_with_subelements: False adv_opts_cond|ignore_charge: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDMapper_2_input.idXML IDMapper_2_input.consensusXML value |
| Test-3 |
id: IDMapper_3_input.idXML in: IDMapper_3_input.featureXML rt_tolerance: 4.0 mz_tolerance: 3.0 mz_measure: ppm mz_reference: precursor feature|use_centroid_rt: False feature|use_centroid_mz: True consensus|use_subelements: False consensus|annotate_ids_with_subelements: False adv_opts_cond|ignore_charge: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDMapper_3_input.idXML IDMapper_3_input.featureXML value |
| Test-4 |
id: IDMapper_4_input.idXML in: IDMapper_4_input.featureXML rt_tolerance: 10.0 mz_tolerance: 20.0 mz_measure: ppm mz_reference: peptide feature|use_centroid_rt: False feature|use_centroid_mz: True consensus|use_subelements: False consensus|annotate_ids_with_subelements: False spectra|_in: IDMapper_4_input.mzML adv_opts_cond|ignore_charge: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDMapper_4_input.idXML IDMapper_4_input.featureXML IDMapper_4_input.mzML value |
| Test-5 |
id: IDMapper_5_input.idXML in: IDMapper_5_input.featureXML rt_tolerance: 20.0 mz_tolerance: 10.0 mz_measure: ppm mz_reference: peptide feature|use_centroid_rt: False feature|use_centroid_mz: False consensus|use_subelements: False consensus|annotate_ids_with_subelements: False spectra|_in: IDMapper_5_input.mzML adv_opts_cond|ignore_charge: False adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
IDMapper_5_input.idXML IDMapper_5_input.featureXML IDMapper_5_input.mzML value |