Repository revision
15:78cd8b69da4c

Repository 'bcftools_roh'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bcftools_roh

bcftools roh tool metadata
Miscellaneous
bcftools roh
HMM model for detecting runs of homo/autozygosity
bcftools_roh
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_roh/bcftools_roh/1.10
1.10
bcftools 2>&1 | grep 'Version:'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_roh/bcftools_roh/1.15.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_roh/bcftools_roh/1.10 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_roh/bcftools_roh/1.9+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_roh/bcftools_roh/1.9
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_roh/bcftools_roh/1.4.0.0
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_roh/bcftools_roh/1.3.1.0
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_roh/bcftools_roh/1.3.1
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_roh/bcftools_roh/1.3.0
bcftools_roh
Requirements (dependencies defined in the <requirements> tag set)
name version type
bcftools 1.10 package
htslib 1.10 package
Functional tests
name inputs outputs required files
Test-1 input_file: roh.vcf
sec_general|AF_dflt: 0.4
sec_general|GTs_only: 30
name: value
roh.vcf
value
Test-2 input_file: roh.vcf
sec_general|AF_dflt: 0.4
sec_general|GTs_only: 30
output_type: r
name: value
roh.vcf
value