Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster/mothur_cluster/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster/mothur_cluster/1.36.1.0 |
mothur_cluster |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
vsearch | 2.6.0 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$matrix.dist' matrix.dist.dat && ln -s '$matrix.name' matrix.name.dat && ln -s '$count' count.dat && echo 'cluster( #if $matrix.format == "phylip": phylip=matrix.dist.dat, #else column=matrix.dist.dat, #end if #if $matrix.name: name=matrix.name.dat, #end if #if $count: count=count.dat, #end if #if float($cutoff) > 0.0: cutoff=$cutoff, #end if #if $select_method.method =="opti": metric=$select_method.metric, initialize=$select_method.initialize, delta=$select_method.delta, iters=$select_method.iters, #end if precision=$precision, sim=$sim, method=$select_method.method )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
matrix|dist: amazon.dist matrix|format: phylip savelog: True |
name: value name: value name: value name: value |
amazon.dist value |
Test-2 |
matrix|dist: amazon.pair.dist matrix|name: amazon.names matrix|format: column savelog: True |
name: value name: value name: value name: value |
amazon.pair.dist amazon.names value |
Test-3 |
matrix|dist: amazon.pair.dist matrix|name: amazon.names matrix|format: column savelog: True |
name: value name: value name: value name: value |
amazon.pair.dist amazon.names value |