Repository revision
6:a74dbfee5a86

Repository 'cactus_cactus'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus

Cactus tool metadata
Miscellaneous
Cactus
whole-genome multiple sequence alignment
cactus_cactus
toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus/cactus_cactus/2.4.0+galaxy0
2.4.0+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus/cactus_cactus/2.4.1+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus/cactus_cactus/2.4.0+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus/cactus_cactus/2.2.4+galaxy1
toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus/cactus_cactus/2.2.4+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus/cactus_cactus/2.2.1+galaxy1
toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus/cactus_cactus/2.2.1+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus/cactus_cactus/2.1.1+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus/cactus_cactus/2.0.5+galaxy0
cactus_cactus
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 aln_mode|in_tree: test_tree.nhx
aln_mode|aln_mode_select: interspecies
in_seqs_0|label: simCow_chr6
in_seqs_0|fasta: simCow_chr6.fasta
in_seqs_1|label: simDog_chr6
in_seqs_1|fasta: simDog_chr6.fasta
in_seqs_2|label: simHuman_chr6
in_seqs_2|fasta: simHuman_chr6.fasta
in_seqs_3|label: simMouse_chr6
in_seqs_3|fasta: simMouse_chr6.fasta
in_seqs_4|label: simRat_chr6
in_seqs_4|fasta: simRat_chr6.fasta
name: value
test_tree.nhx
simCow_chr6.fasta
simDog_chr6.fasta
simHuman_chr6.fasta
simMouse_chr6.fasta
simRat_chr6.fasta
value
Test-2 aln_mode|ref_level: simCow_chr6
aln_mode|aln_mode_select: intraspecies
in_seqs_0|label: simCow_chr6
in_seqs_0|fasta: simCow_chr6.fasta
in_seqs_1|label: simDog_chr6
in_seqs_1|fasta: simDog_chr6.fasta
in_seqs_2|label: simHuman_chr6
in_seqs_2|fasta: simHuman_chr6.fasta
in_seqs_3|label: simMouse_chr6
in_seqs_3|fasta: simMouse_chr6.fasta
in_seqs_4|label: simRat_chr6
in_seqs_4|fasta: simRat_chr6.fasta
name: value
name: value
simCow_chr6.fasta
simDog_chr6.fasta
simHuman_chr6.fasta
simMouse_chr6.fasta
simRat_chr6.fasta
value
Test-3 aln_mode|ref_level: germ_25
aln_mode|aln_mode_select: intraspecies
in_seqs_0|label: germ_25
in_seqs_0|fasta: germ_25.fasta.gz
in_seqs_1|label: vulg_25
in_seqs_1|fasta: vulg_25.fasta.gz
in_seqs_2|label: pens_25
in_seqs_2|fasta: pens_25.fasta.gz
name: value
name: value
germ_25.fasta.gz
vulg_25.fasta.gz
pens_25.fasta.gz
value
Test-4 aln_mode|ref_level: badheader1
aln_mode|aln_mode_select: intraspecies
in_seqs_0|label: badheader1
in_seqs_0|fasta: bh1.fasta.gz
in_seqs_1|label: badheader2
in_seqs_1|fasta: bh2.fasta.gz
name: value
name: value
bh1.fasta.gz
bh2.fasta.gz
value