Repository revision
7:cb97fb3d1b0f

Repository 'myrimatch'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch

MyriMatch tool metadata
Miscellaneous
MyriMatch
Identify peptides in tandem mass spectra.
myrimatch
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.20175.0
3.0.20175.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.21142.0
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.20175.0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.20163.0
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.11579.0
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.11392.0
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.10246.0
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/0.1.0
myrimatch
Requirements (dependencies defined in the <requirements> tag set)
name version type
bumbershoot 3_0_20175_cbf82d0 package
Functional tests
name inputs outputs required files
Test-1 MinTerminiCleavages: 1
MaxDynamicMods: 2
tolerance_options|precursor_tolerance|MonoPrecursorMzTolerance: 50
advanced|NumChargeStates: 5
StaticMods_0|aa: C
DynamicMods_1|motif: (Q
ProteinDatabase: input/cow.protein.PRG2012-subset.fasta
DecoyPrefix: XXX_
DynamicMods_0|mass: 15.9949
DynamicMods_0|motif: M
tolerance_options|precursor_tolerance|PrecursorMzToleranceRule: mono
DynamicMods_2|mass: 0.984016
advanced|UseSmartPlusThreeModel: False
input: input/201208-378803.mzML
DynamicMods_2|motif: [QN]
StaticMods_0|mass: 58.00548
advanced|MaxResultRank: 3
DynamicMods_1|mass: -17.026
MaxMissedCleavages: 2
advanced|MonoisotopeAdjustmentSet: [-1,2]
attributes: name
input/201208-378803.mzML
input/cow.protein.PRG2012-subset.fasta
name
Test-2 MinTerminiCleavages: 2
tolerance_options|precursor_tolerance|MonoPrecursorMzTolerance: 15
DecoyPrefix: XXX_
CleavageRules: Trypsin
tolerance_options|precursor_tolerance|PrecursorMzToleranceRule: mono
MaxMissedCleavages: 4
input: input/201208-378803.mzML
ProteinDatabase: input/cow.protein.PRG2012-subset.fasta
advanced|MaxResultRank: 1
advanced|NumChargeStates: 3
advanced|MonoisotopeAdjustmentSet: 0
attributes: name
input/201208-378803.mzML
input/cow.protein.PRG2012-subset.fasta
name