Repository revision
5:e26ef51ef341

Repository 'myrimatch'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch

MyriMatch tool metadata
Miscellaneous
MyriMatch
Identify peptides in tandem mass spectra.
myrimatch
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.11579.0
3.0.11579.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.20163.0
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.11579.0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.11392.0
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.10246.0
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/0.1.0
myrimatch
Requirements (dependencies defined in the <requirements> tag set)
name version type
bumbershoot 3_0_11579 package
Functional tests
name inputs outputs required files
Test-1 MinTerminiCleavages: 1
advanced|MaxResultRank: 3
StaticMods_0|aa: C
DynamicMods_1|motif: (Q
advanced|MonoisotopeAdjustmentSet: [-1,2]
DecoyPrefix: XXX_
advanced|UseSmartPlusThreeModel: False
DynamicMods_2|motif: [QN]
tolerance_options|precursor_tolerance|PrecursorMzToleranceRule: mono
DynamicMods_0|mass: 15.9949
DynamicMods_0|motif: M
MaxDynamicMods: 2
DynamicMods_2|mass: 0.984016
DynamicMods_1|mass: -17.026
input: input/201208-378803.mzML
ProteinDatabase: input/cow.protein.PRG2012-subset.fasta
StaticMods_0|mass: 58.00548
tolerance_options|precursor_tolerance|MonoPrecursorMzTolerance: 50
advanced|NumChargeStates: 5
MaxMissedCleavages: 2
output: 201208-378803-mm.pepXML
input/201208-378803.mzML
input/cow.protein.PRG2012-subset.fasta
201208-378803-mm.pepXML
Test-2 MinTerminiCleavages: 2
advanced|MaxResultRank: 1
DecoyPrefix: XXX_
CleavageRules: Trypsin
tolerance_options|precursor_tolerance|PrecursorMzToleranceRule: mono
advanced|MonoisotopeAdjustmentSet: 0
ProteinDatabase: input/cow.protein.PRG2012-subset.fasta
input: input/201208-378803.mzML
tolerance_options|precursor_tolerance|MonoPrecursorMzTolerance: 15
advanced|NumChargeStates: 3
MaxMissedCleavages: 4
output: 201208-378803-mm-15ppm-fully-tryptic.pepXML
input/201208-378803.mzML
input/cow.protein.PRG2012-subset.fasta
201208-378803-mm-15ppm-fully-tryptic.pepXML