Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.20163.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.11579.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.11392.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.10246.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/0.1.0 |
myrimatch |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bumbershoot | 3_0_11579 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
MinTerminiCleavages: 1 advanced|MaxResultRank: 3 StaticMods_0|aa: C DynamicMods_1|motif: (Q advanced|MonoisotopeAdjustmentSet: [-1,2] DecoyPrefix: XXX_ advanced|UseSmartPlusThreeModel: False DynamicMods_2|motif: [QN] tolerance_options|precursor_tolerance|PrecursorMzToleranceRule: mono DynamicMods_0|mass: 15.9949 DynamicMods_0|motif: M MaxDynamicMods: 2 DynamicMods_2|mass: 0.984016 DynamicMods_1|mass: -17.026 input: input/201208-378803.mzML ProteinDatabase: input/cow.protein.PRG2012-subset.fasta StaticMods_0|mass: 58.00548 tolerance_options|precursor_tolerance|MonoPrecursorMzTolerance: 50 advanced|NumChargeStates: 5 MaxMissedCleavages: 2 |
output: 201208-378803-mm.pepXML |
input/201208-378803.mzML input/cow.protein.PRG2012-subset.fasta 201208-378803-mm.pepXML |
Test-2 |
MinTerminiCleavages: 2 advanced|MaxResultRank: 1 DecoyPrefix: XXX_ CleavageRules: Trypsin tolerance_options|precursor_tolerance|PrecursorMzToleranceRule: mono advanced|MonoisotopeAdjustmentSet: 0 ProteinDatabase: input/cow.protein.PRG2012-subset.fasta input: input/201208-378803.mzML tolerance_options|precursor_tolerance|MonoPrecursorMzTolerance: 15 advanced|NumChargeStates: 3 MaxMissedCleavages: 4 |
output: 201208-378803-mm-15ppm-fully-tryptic.pepXML |
input/201208-378803.mzML input/cow.protein.PRG2012-subset.fasta 201208-378803-mm-15ppm-fully-tryptic.pepXML |