| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_alnqual/lofreq_alnqual/2.1.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_alnqual/lofreq_alnqual/2.1.4+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/lofreq_alnqual/lofreq_alnqual/2.1.3.1+galaxy0 |
| lofreq_alnqual |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| lofreq | 2.1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reads: lofreq-in1.bam reference_source|ref: pBR322.fa reference_source|ref_selector: history |
attributes: name |
lofreq-in1.bam pBR322.fa name |
| Test-2 |
reference_source|ref: pBR322.fa reads: lofreq-in1.bam alnqual_choice|alnquals_to_use: -B reference_source|ref_selector: history |
attributes: name |
lofreq-in1.bam pBR322.fa name |
| Test-3 |
reference_source|ref: pBR322.fa reads: lofreq-in1.bam alnqual_choice|alnquals_to_use: -A reference_source|ref_selector: history |
attributes: name |
lofreq-in1.bam pBR322.fa name |
| Test-4 |
alnqual_choice|extended_baq: False reads: lofreq-in1.bam reference_source|ref: pBR322.fa reference_source|ref_selector: history |
attributes: name |
lofreq-in1.bam pBR322.fa name |
| Test-5 |
reads: lofreq-in1.bam reference_source|ref: pBR322.fa reference_source|ref_selector: history |
attributes: name |
lofreq-in1.bam pBR322.fa name |