Repository revision
2:5f76b20953e5

Repository 'porechop'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/porechop

Porechop tool metadata
Miscellaneous
Porechop
adapter trimmer for Oxford Nanopore reads
porechop
toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.4
0.2.4
porechop --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.4 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.3
porechop
Requirements (dependencies defined in the <requirements> tag set)
name version type
porechop 0.2.4 package
Functional tests
name inputs outputs required files
Test-1 input_file: test_format.fasta
format: fasta
name: value
test_format.fasta
value
Test-2 input_file: test_format.fastq.gz
format: fastq
name: value
test_format.fastq.gz
value
Test-3 input_file: test_format.fasta
format: fasta.gz
name: value
test_format.fasta
value
Test-4 input_file: test_format.fasta
format: fastq.gz
name: value
test_format.fasta
value
Test-5 input_file: test_format.fasta
format: fasta
barcode_binning_settings|barcode_threshold: 70
barcode_binning_settings|barcode_diff: 4
barcode_binning_settings|require_two_barcodes: True
barcode_binning_settings|discard_unassigned: True
end_adapter_settings|end_size: 100
end_adapter_settings|min_trim_size: 2
end_adapter_settings|extra_end_trim: 1
end_adapter_settings|end_threshold: 80
middle_adapter_settings|discard_middle: True
middle_adapter_settings|middle_threshold: 90
middle_adapter_settings|min_split_read_size: 1500
name: value
test_format.fasta
value