Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.4+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.4 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.3 |
porechop |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
porechop | 0.2.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_file: test_format.fasta format: fasta |
name: value |
test_format.fasta value |
Test-2 |
input_file: test_format.fastq.gz format: fastq |
name: value |
test_format.fastq.gz value |
Test-3 |
input_file: test_format.fasta format: fasta.gz |
name: value |
test_format.fasta value |
Test-4 |
input_file: test_format.fasta format: fastq.gz |
name: value |
test_format.fasta value |
Test-5 |
input_file: test_format.fasta format: fasta barcode_binning_settings|barcode_threshold: 70 barcode_binning_settings|barcode_diff: 4 barcode_binning_settings|require_two_barcodes: True barcode_binning_settings|discard_unassigned: True end_adapter_settings|end_size: 100 end_adapter_settings|min_trim_size: 2 end_adapter_settings|extra_end_trim: 1 end_adapter_settings|end_threshold: 80 middle_adapter_settings|discard_middle: True middle_adapter_settings|middle_threshold: 90 middle_adapter_settings|min_split_read_size: 1500 |
name: value |
test_format.fasta value |