| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_check/mothur_align_check/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_check/mothur_align_check/1.36.1.0 |
| mothur_align_check |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$fasta' fasta.dat &&
ln -s '$name' name.dat &&
ln -s '$count' count.dat &&
ln -s '$map' map.dat &&
echo 'align.check(
fasta=fasta.dat,
#if $name:
name=name.dat,
#end if
#if $count:
count=count.dat,
#end if
map=map.dat
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
&& cat fasta.align.check
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fasta: amazon.align_head_short ss|map: silva.ss.map.head ss|source: history savelog: True |
name: value name: value |
amazon.align_head_short silva.ss.map.head value |
| Test-2 |
fasta: amazon.align_head_short ss|map: silva.ss.map.head ss|source: history name: amazon.align_head.names savelog: True |
name: value name: value |
amazon.align_head_short silva.ss.map.head amazon.align_head.names value |