Repository revision
8:1d201e8378b3

Repository 'hicexplorer_hicvalidatelocations'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations

hicValidateLocations tool metadata
Miscellaneous
hicValidateLocations
validate detected loops with protein peaks.
hicexplorer_hicvalidatelocations
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.7.2+galaxy0
3.7.2+galaxy0
hicValidateLocations --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.7.5+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.7.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.6+galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.4.3.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicvalidatelocations/hicexplorer_hicvalidatelocations/3.3.1.0
hicexplorer_hicvalidatelocations
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.7.2 package
Functional tests
name inputs outputs required files
Test-1 data: hicValidateLocations/loops_1.bedgraph
validationData: hicValidateLocations/GSM935376_hg19_Gm12878_Smc3.narrowPeak
resolution: 10000
prefixLoop_selector: add
 name: value
name: value
 hicValidateLocations/loops_1.bedgraph
hicValidateLocations/GSM935376_hg19_Gm12878_Smc3.narrowPeak
value