Repository revision
6:0c415ba215e7

Repository 'seqwish'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/seqwish

seqwish tool metadata
Miscellaneous
seqwish
Alignment to variation graph inducer
seqwish
toolshed.g2.bx.psu.edu/repos/iuc/seqwish/seqwish/0.7.5
0.7.5
seqwish --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/seqwish/seqwish/0.7.5 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/seqwish/seqwish/0.7.4
toolshed.g2.bx.psu.edu/repos/iuc/seqwish/seqwish/0.7.3
toolshed.g2.bx.psu.edu/repos/iuc/seqwish/seqwish/0.7.2
toolshed.g2.bx.psu.edu/repos/iuc/seqwish/seqwish/0.7.1
toolshed.g2.bx.psu.edu/repos/iuc/seqwish/seqwish/0.4.1
toolshed.g2.bx.psu.edu/repos/iuc/seqwish/seqwish/0.4
seqwish
Requirements (dependencies defined in the <requirements> tag set)
name version type
seqwish 0.7.5 package
Additional information about this tool
seqwish
-p '$paf_alns'
-s ${ ' '.join(["'%s'" % x for x in $seqs]) }
--gfa='$out_gfa'
#if $m:
    -m '$m'
#end if
--threads=\${GALAXY_SLOTS:-1}
#if str($r):
    -r $r
#end if
#if str($k):
    -k $k
#end if
#if str($B):
    -B $B
#end if
    
None
False
Functional tests
name inputs outputs required files
Test-1 paf_alns: A-3105.paf.gz
seqs: A-3105.fa.gz
name: value
A-3105.paf.gz
A-3105.fa.gz
value
Test-2 paf_alns: A-3105.paf.gz
seqs: A-3105.fa.gz
r: 3000
k: 1
B: 1000000
name: value
A-3105.paf.gz
A-3105.fa.gz
value