| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.3.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.3.1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.2.3+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.2.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.1.2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.0.32+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.0.31+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.0.31+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.0.14+galaxy2.9.1 |
| proteinortho |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| proteinortho | 6.3.1 | package |
| diamond | 2.1.8 | package |
| blast | 2.15.0 | package |
| ucsc-blat | 445 | package |
| last | 1519 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_files: ['L.fasta', 'C.fasta', 'E.fasta', 'M.fasta'] p: diamond |
name: value name: value name: value |
L.fasta C.fasta E.fasta M.fasta value |
| Test-2 |
input_files: ['L.fasta', 'C.fasta', 'E.fasta', 'M.fasta'] p: diamond sim: 42 conn: 1 more_options|cov: 42 more_options|identity: 42 more_options|singles: True more_options|core: True |
name: value name: value name: value |
L.fasta C.fasta E.fasta M.fasta value |
| Test-3 |
input_files: ['L.fasta', 'C.fasta', 'E.fasta', 'M.fasta'] p: diamond synteny|input_files_syn: ['L.gff', 'C.gff', 'E.gff', 'M.gff'] synteny|synteny_options: specified |
name: value name: value name: value |
L.fasta C.fasta E.fasta M.fasta L.gff C.gff E.gff M.gff value |
| Test-4 |
input_files: ['L.fasta', 'C.fasta', 'E.fasta', 'M.fasta'] p: blastp |
name: value name: value name: value |
L.fasta C.fasta E.fasta M.fasta value |
| Test-5 |
input_files: ['L.fasta', 'C.fasta', 'E.fasta', 'M.fasta'] p: autoblast |
name: value name: value name: value |
L.fasta C.fasta E.fasta M.fasta value |
| Test-6 |
input_files: ['L.fasta', 'C.fasta', 'E.fasta', 'M.fasta'] p: lastp |
name: value name: value name: value |
L.fasta C.fasta E.fasta M.fasta value |
| Test-7 |
input_files: ['L.fasta', 'C.fasta', 'E.fasta', 'M.fasta'] p: blastp |
name: value name: value name: value |
L.fasta C.fasta E.fasta M.fasta value |