| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/intervene/intervene_pairwise/0.6.5+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/intervene/intervene_pairwise/0.6.5+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/intervene/intervene_pairwise/0.6.5 |
| toolshed.g2.bx.psu.edu/repos/iuc/intervene/intervene_pairwise/0.6.4 |
| intervene_pairwise |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| intervene | 0.6.5 | package |
| Additional information about this tool |
#import re
#set $labels = ",".join(["'%s'" % re.sub('[^\s\w\-\.]', '_', str($file.element_identifier)) for file in $input])
#set $type = 'genomic 'if $input[0].is_of_type('interval') else 'list'
intervene pairwise
--type $type
--input #echo " ".join(["'%s'" % file for file in $input])
--names $labels
--compute $compute_conditional.compute
#if $compute_conditional.compute == 'fisher'
--genome '$compute_conditional.genome'
#end if
#if str($corrtype) != 'None'
--corr
--corrtype $corrtype
#end if
--htype $htype
$diagonal
--output results
--barcolor '$barcolor'
--fontsize '$fontsize'
--title '$title'
--figtype $figtype
--figsize $figsize_width $figsize_height
--dpi $dpi &&
mv results/Intervene_pairwise_*.${figtype} results/Intervene_pairwise.plot
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: ['a.bed', 'b.bed', 'c.bed'] out_matrix: True |
name: value name: value |
a.bed b.bed c.bed value |
| Test-2 |
input: ['a.bed', 'b.bed', 'c.bed'] compute_conditional|genome: mm10 compute_conditional|compute: fisher |
name: value |
a.bed b.bed c.bed value |