Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.3.0.1+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.3.0+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.2.0+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.1.1+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.1.0+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.0.6+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.0.5+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.2.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5 |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.2 |
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/2.3.4 |
seurat |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
r-seurat | 4.3.0 | package |
r-rmarkdown | 2.18 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
counts: counts.tab.gz adv|min_cells: 3 adv|min_genes: 200 adv|low_thresholds: 1 adv|high_thresholds: 20000000 adv|cells_use: 500 adv|resolution: 0.6 adv|min_pct: 0.25 adv|logfc_threshold: 0.25 meta|showcode: True meta|warn: False meta|varstate: False meta|plots: feat |
name: value |
counts.tab.gz value |
Test-2 |
counts: counts.tab.gz adv|min_cells: 3 adv|min_genes: 200 adv|low_thresholds: 1 adv|high_thresholds: 20000000 adv|cells_use: 500 adv|resolution: 0.6 adv|perplexity: 16 adv|min_pct: 0.25 adv|logfc_threshold: 0.25 meta|showcode: True meta|warn: False meta|varstate: False meta|plots: feat |
name: value |
counts.tab.gz value |