Repository revision
14:c0fd285eb553

Repository 'seurat'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/seurat

Seurat tool metadata
Miscellaneous
Seurat
- toolkit for exploration of single-cell RNA-seq data
seurat
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.3.0+galaxy0
4.3.0+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.3.0.1+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.3.0+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.2.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.1.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.1.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.0.6+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.0.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.2.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.2
toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/2.3.4
seurat
Requirements (dependencies defined in the <requirements> tag set)
name version type
r-seurat 4.3.0 package
r-rmarkdown 2.18 package
Functional tests
name inputs outputs required files
Test-1 counts: counts.tab.gz
adv|min_cells: 3
adv|min_genes: 200
adv|low_thresholds: 1
adv|high_thresholds: 20000000
adv|cells_use: 500
adv|resolution: 0.6
adv|min_pct: 0.25
adv|logfc_threshold: 0.25
meta|showcode: True
meta|warn: False
meta|varstate: False
meta|plots: feat
name: value
counts.tab.gz
value
Test-2 counts: counts.tab.gz
adv|min_cells: 3
adv|min_genes: 200
adv|low_thresholds: 1
adv|high_thresholds: 20000000
adv|cells_use: 500
adv|resolution: 0.6
adv|perplexity: 16
adv|min_pct: 0.25
adv|logfc_threshold: 0.25
meta|showcode: True
meta|warn: False
meta|varstate: False
meta|plots: feat
name: value
counts.tab.gz
value